Details for gene set VERHAAK_PN

Table: GSEA Results Summary

Dataset	shNF1_exprs.shNF1_phenotype.cls #shNF1_versus_shCtrl.shNF1_phenotype.cls #shNF1_versus_shCtrl_repos
Phenotype	shNF1_phenotype.cls#shNF1_versus_shCtrl_repos
Upregulated in class	shCtrl
GeneSet	VERHAAK_PN_2010
Enrichment Score (ES)	-0.31741506
Normalized Enrichment Score (NES)	-1.4421126
Nominal p-value	0.005076142
FDR q-value	0.03953936
FWER p-Value	0.315

Table: GSEA details [plain text format]
	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ALCAM	ALCAM	45	0.100	0.0191	No
2	CBX1	CBX1	58	0.098	0.0392	No
3	RAP2A	RAP2A	236	0.075	0.0468	No
4	ZNF286A	ZNF286A	295	0.070	0.0589	No
5	GPM6A	GPM6A	422	0.065	0.0667	No
6	CNTN1	CNTN1	452	0.063	0.0787	No
7	DNM3	DNM3	548	0.060	0.0869	No
8	ACTR1A	ACTR1A	747	0.055	0.0894	No
9	TOP2B	TOP2B	794	0.055	0.0987	No
10	CAMSAP1L1	CAMSAP1L1	829	0.054	0.1085	No
11	DBN1	DBN1	840	0.054	0.1194	No
12	RAD21	RAD21	863	0.053	0.1296	No
13	GABRA3	GABRA3	989	0.051	0.1344	No
14	FHOD3	FHOD3	1516	0.043	0.1190	No
15	ZNF510	ZNF510	1794	0.041	0.1146	No
16	BCOR	BCOR	1830	0.040	0.1215	No
17	SEZ6L	SEZ6L	2022	0.038	0.1207	No
18	TTC3	TTC3	2176	0.037	0.1213	No
19	HDAC2	HDAC2	2530	0.034	0.1121	No
20	NOL4	NOL4	3041	0.031	0.0948	No
21	LPHN3	LPHN3	3072	0.031	0.0998	No
22	E2F3	E2F3	3108	0.030	0.1046	No
23	HOXD3	HOXD3	3432	0.028	0.0955	No
24	NRXN2	NRXN2	3492	0.028	0.0986	No
25	SOX11	SOX11	3515	0.028	0.1034	No
26	FGF9	FGF9	3578	0.027	0.1063	No
27	SLC1A1	SLC1A1	3612	0.027	0.1105	No
28	PAK3	PAK3	3667	0.027	0.1136	No
29	MLLT11	MLLT11	4075	0.025	0.0998	No
30	BCL7A	BCL7A	4126	0.024	0.1026	No
31	SLCO5A1	SLCO5A1	4299	0.024	0.0995	No
32	ZNF184	ZNF184	4498	0.023	0.0951	No
33	MPPED2	MPPED2	4550	0.022	0.0974	No
34	ZEB2	ZEB2	4614	0.022	0.0991	No
35	TNRC4	TNRC4	5083	0.020	0.0814	No
36	DPP6	DPP6	5104	0.020	0.0847	No
37	CLASP2	CLASP2	5119	0.020	0.0882	No
38	PAK7	PAK7	5215	0.019	0.0878	No
39	PCDH11Y	PCDH11Y	5265	0.019	0.0896	No
40	MMP16	MMP16	5348	0.019	0.0897	No
41	VEZF1	VEZF1	5397	0.018	0.0913	No
42	DCX	DCX	5806	0.017	0.0758	No
43	NCAM1	NCAM1	6426	0.014	0.0499	No
44	LRRTM4	LRRTM4	6429	0.014	0.0528	No
45	ATAD5	ATAD5	6435	0.014	0.0555	No
46	TOPBP1	TOPBP1	6531	0.014	0.0540	No
47	GRID2	GRID2	6874	0.012	0.0406	No
48	SPTBN2	SPTBN2	7001	0.012	0.0373	No
49	CXXC4	CXXC4	7355	0.011	0.0230	No
50	KLRC4	KLRC4	7526	0.010	0.0173	No
51	FBXO21	FBXO21	7728	0.010	0.0099	No
52	SRGAP3	SRGAP3	7746	0.009	0.0111	No
53	GSK3B	GSK3B	7802	0.009	0.0105	No
54	MATR3	MATR3	8083	0.008	-0.0009	No
55	FLRT1	FLRT1	8146	0.008	-0.0021	No
56	ATP1A3	ATP1A3	8391	0.007	-0.0119	No
57	CDKN1B	CDKN1B	8492	0.007	-0.0151	No
58	TMEM35	TMEM35	8601	0.007	-0.0188	No
59	KIF21B	KIF21B	8787	0.006	-0.0261	No
60	EPB41	EPB41	8844	0.006	-0.0275	No
61	ABAT	ABAT	9125	0.005	-0.0396	No
62	KLRK1	KLRK1	9147	0.005	-0.0396	No
63	C6orf134	C6orf134	9264	0.004	-0.0440	No
64	ZNF248	ZNF248	9318	0.004	-0.0456	No
65	PFN2	PFN2	9445	0.004	-0.0507	No
66	PURG	PURG	9522	0.004	-0.0535	No
67	SNX26	SNX26	9529	0.004	-0.0530	No
68	MCM10	MCM10	9565	0.003	-0.0539	No
69	CLGN	CLGN	9585	0.003	-0.0541	No
70	SOX10	SOX10	9761	0.003	-0.0617	No
71	ZNF711	ZNF711	9786	0.003	-0.0622	No
72	CDC25A	CDC25A	9788	0.003	-0.0617	No
73	CASK	CASK	9890	0.002	-0.0659	No
74	RALGPS2	RALGPS2	9934	0.002	-0.0675	No
75	CA10	CA10	9972	0.002	-0.0688	No
76	CHD7	CHD7	9974	0.002	-0.0684	No
77	AOF2	AOF2	9990	0.002	-0.0686	No
78	KLRC3	KLRC3	10008	0.002	-0.0690	No
79	STMN1	STMN1	10027	0.002	-0.0695	No
80	MARCKS	MARCKS	10036	0.002	-0.0694	No
81	WASF1	WASF1	10041	0.002	-0.0692	No
82	SATB1	SATB1	10095	0.002	-0.0714	No
83	DGKI	DGKI	10108	0.002	-0.0716	No
84	RALGPS1	RALGPS1	10203	0.001	-0.0757	No
85	TAF5	TAF5	10419	0.001	-0.0855	No
86	FAM125B	FAM125B	10490	0.001	-0.0887	No
87	RUFY3	RUFY3	10556	0.000	-0.0917	No
88	PELI1	PELI1	10697	-0.000	-0.0982	No
89	TSPAN3	TSPAN3	10699	-0.000	-0.0982	No
90	MMP15	MMP15	11307	-0.002	-0.1261	No
91	IL1RAPL1	IL1RAPL1	11319	-0.002	-0.1262	No
92	CDC7	CDC7	11332	-0.002	-0.1263	No
93	FAM110B	FAM110B	11490	-0.003	-0.1330	No
94	PCDH11X	PCDH11X	11637	-0.003	-0.1392	No
95	NRXN1	NRXN1	11758	-0.004	-0.1440	No
96	ZNF643	ZNF643	11822	-0.004	-0.1462	No
97	MYO10	MYO10	11837	-0.004	-0.1460	No
98	TMCC1	TMCC1	11903	-0.004	-0.1482	No
99	MAPT	MAPT	12192	-0.005	-0.1606	No
100	SORCS3	SORCS3	12363	-0.006	-0.1673	No
101	PLCB4	PLCB4	12472	-0.006	-0.1711	No
102	P2RX7	P2RX7	12774	-0.007	-0.1837	No
103	STMN4	STMN4	12976	-0.008	-0.1914	No
104	PDE10A	PDE10A	12988	-0.008	-0.1903	No
105	MYB	MYB	13495	-0.009	-0.2120	No
106	SCN3A	SCN3A	13980	-0.011	-0.2323	No
107	MAP2	MAP2	14012	-0.011	-0.2314	No
108	LRP6	LRP6	14070	-0.011	-0.2317	No
109	HMGB3	HMGB3	14202	-0.012	-0.2353	No
110	TMEM118	TMEM118	14294	-0.012	-0.2370	No
111	SOX2	SOX2	14311	-0.012	-0.2352	No
112	ERBB3	ERBB3	14471	-0.013	-0.2399	No
113	YPEL1	YPEL1	14618	-0.013	-0.2439	No
114	DPF1	DPF1	14715	-0.014	-0.2455	No
115	HRASLS	HRASLS	14793	-0.014	-0.2461	No
116	MYT1	MYT1	15328	-0.016	-0.2677	No
117	ZNF804A	ZNF804A	15432	-0.017	-0.2690	No
118	EPHB1	EPHB1	15812	-0.018	-0.2828	No
119	AMOTL2	AMOTL2	16000	-0.019	-0.2875	No
120	REEP1	REEP1	16058	-0.019	-0.2861	No
121	HN1	HN1	16160	-0.020	-0.2867	No
122	CRMP1	CRMP1	16380	-0.021	-0.2925	No
123	TOX3	TOX3	16422	-0.021	-0.2900	No
124	PPM1E	PPM1E	16519	-0.021	-0.2899	No
125	MARCKSL1	MARCKSL1	16590	-0.022	-0.2886	No
126	CDK5R1	CDK5R1	16855	-0.023	-0.2961	No
127	NR0B1	NR0B1	16982	-0.024	-0.2970	No
128	CKB	CKB	17020	-0.024	-0.2937	No
129	DPYSL4	DPYSL4	17265	-0.025	-0.2998	No
130	SEC61A2	SEC61A2	17540	-0.026	-0.3070	No
131	CRB1	CRB1	17541	-0.026	-0.3015	No
132	C1orf106	C1orf106	17766	-0.028	-0.3061	No
133	CSNK1E	CSNK1E	17942	-0.029	-0.3081	No
134	RBPJ	RBPJ	18142	-0.030	-0.3111	Yes
135	MAST1	MAST1	18212	-0.030	-0.3079	Yes
136	DUSP26	DUSP26	18351	-0.031	-0.3077	Yes
137	PAFAH1B3	PAFAH1B3	18371	-0.031	-0.3020	Yes
138	ICK	ICK	18543	-0.032	-0.3031	Yes
139	MYST2	MYST2	18726	-0.034	-0.3045	Yes
140	PODXL2	PODXL2	18990	-0.035	-0.3093	Yes
141	WDR68	WDR68	18992	-0.035	-0.3019	Yes
142	ARHGEF9	ARHGEF9	19238	-0.037	-0.3054	Yes
143	BAI3	BAI3	19366	-0.038	-0.3033	Yes
144	PHF16	PHF16	19395	-0.039	-0.2964	Yes
145	GPR17	GPR17	19501	-0.039	-0.2930	Yes
146	VAX2	VAX2	19506	-0.039	-0.2849	Yes
147	RAB33A	RAB33A	19565	-0.040	-0.2791	Yes
148	TMEFF1	TMEFF1	19736	-0.041	-0.2783	Yes
149	GNG4	GNG4	19883	-0.043	-0.2760	Yes
150	C1QL1	C1QL1	19916	-0.044	-0.2683	Yes
151	BEX1	BEX1	20002	-0.045	-0.2629	Yes
152	NLGN3	NLGN3	20159	-0.046	-0.2604	Yes
153	BCAN	BCAN	20254	-0.048	-0.2547	Yes
154	PPM1D	PPM1D	20267	-0.048	-0.2452	Yes
155	MTSS1	MTSS1	20289	-0.048	-0.2360	Yes
156	SOX4	SOX4	20350	-0.049	-0.2285	Yes
157	GRIA2	GRIA2	20478	-0.051	-0.2236	Yes
158	NCALD	NCALD	21072	-0.065	-0.2376	Yes
159	OLIG2	OLIG2	21293	-0.075	-0.2321	Yes
160	FXYD6	FXYD6	21404	-0.084	-0.2196	Yes
161	GSTA4	GSTA4	21457	-0.091	-0.2028	Yes
162	SCG3	SCG3	21484	-0.096	-0.1838	Yes
163	DLL3	DLL3	21526	-0.105	-0.1636	Yes
164	CSPG5	CSPG5	21531	-0.108	-0.1410	Yes
165	TTYH1	TTYH1	21573	-0.137	-0.1140	Yes
166	GADD45G	GADD45G	21585	-0.158	-0.0812	Yes
167	C1orf61	C1orf61	21592	-0.181	-0.0433	Yes
168	ASCL1	ASCL1	21596	-0.206	0.0000	Yes