Details for gene set VERHAAK_MES

Table: GSEA Results Summary

Dataset	shNF1_exprs.shNF1_phenotype.cls #shNF1_versus_shCtrl.shNF1_phenotype.cls #shNF1_versus_shCtrl_repos
Phenotype	shNF1_phenotype.cls#shNF1_versus_shCtrl_repos
Upregulated in class	shNF1
GeneSet	VERHAAK_MES_2010
Enrichment Score (ES)	0.30602142
Normalized Enrichment Score (NES)	1.4981086
Nominal p-value	0.0
FDR q-value	0.018248387
FWER p-Value	0.152

Table: GSEA details [plain text format]
	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	LRRFIP1	LRRFIP1	5	0.137	0.0218	Yes
2	MAN2A1	MAN2A1	12	0.125	0.0416	Yes
3	THBS1	THBS1	13	0.123	0.0614	Yes
4	BNC2	BNC2	40	0.102	0.0766	Yes
5	LAMB1	LAMB1	72	0.095	0.0904	Yes
6	TGFBR2	TGFBR2	80	0.093	0.1050	Yes
7	PLAU	PLAU	94	0.090	0.1188	Yes
8	COL1A1	COL1A1	158	0.082	0.1291	Yes
9	ITGA5	ITGA5	208	0.077	0.1391	Yes
10	ELF4	ELF4	328	0.069	0.1446	Yes
11	IQGAP1	IQGAP1	378	0.067	0.1530	Yes
12	DCBLD2	DCBLD2	494	0.062	0.1576	Yes
13	COL1A2	COL1A2	651	0.057	0.1595	Yes
14	MVP	MVP	711	0.056	0.1657	Yes
15	SH2B3	SH2B3	724	0.056	0.1741	Yes
16	SERPINE1	SERPINE1	725	0.056	0.1831	Yes
17	FHOD1	FHOD1	726	0.056	0.1921	Yes
18	YAP1	YAP1	783	0.055	0.1982	Yes
19	TCIRG1	TCIRG1	1021	0.050	0.1952	Yes
20	GCNT1	GCNT1	1093	0.049	0.1998	Yes
21	FER1L3	FER1L3	1126	0.049	0.2061	Yes
22	ANXA2	ANXA2	1146	0.048	0.2129	Yes
23	WWTR1	WWTR1	1155	0.048	0.2203	Yes
24	CTSZ	CTSZ	1161	0.048	0.2277	Yes
25	PTGER4	PTGER4	1207	0.047	0.2332	Yes
26	CD2AP	CD2AP	1214	0.047	0.2405	Yes
27	LOX	LOX	1391	0.045	0.2394	Yes
28	TLR4	TLR4	1412	0.044	0.2456	Yes
29	NRP1	NRP1	1414	0.044	0.2527	Yes
30	IL4R	IL4R	1474	0.044	0.2570	Yes
31	FHL2	FHL2	1493	0.043	0.2631	Yes
32	CLCF1	CLCF1	1758	0.041	0.2573	Yes
33	MYH9	MYH9	1778	0.041	0.2630	Yes
34	SQRDL	SQRDL	1888	0.040	0.2642	Yes
35	ZNF217	ZNF217	1934	0.039	0.2684	Yes
36	PLS3	PLS3	2001	0.039	0.2715	Yes
37	SYPL1	SYPL1	2107	0.038	0.2726	Yes
38	FNDC3B	FNDC3B	2151	0.037	0.2766	Yes
39	FOLR2	FOLR2	2183	0.037	0.2811	Yes
40	DOK3	DOK3	2188	0.037	0.2868	Yes
41	C1orf38	C1orf38	2216	0.037	0.2915	Yes
42	PTRF	PTRF	2260	0.036	0.2953	Yes
43	NCF4	NCF4	2426	0.035	0.2932	Yes
44	IL15RA	IL15RA	2486	0.035	0.2960	Yes
45	SRPX2	SRPX2	2851	0.032	0.2841	Yes
46	ARHGAP29	ARHGAP29	2887	0.032	0.2876	Yes
47	SLC16A3	SLC16A3	2914	0.032	0.2915	Yes
48	SEC24D	SEC24D	2951	0.031	0.2948	Yes
49	EFEMP2	EFEMP2	3022	0.031	0.2965	Yes
50	ACPP	ACPP	3084	0.030	0.2985	Yes
51	ADAM12	ADAM12	3114	0.030	0.3020	Yes
52	ARSJ	ARSJ	3133	0.030	0.3060	Yes
53	LCP2	LCP2	3720	0.027	0.2829	No
54	CAST	CAST	3894	0.026	0.2789	No
55	NCF2	NCF2	3940	0.025	0.2809	No
56	CLEC2B	CLEC2B	4145	0.024	0.2752	No
57	PLK3	PLK3	4263	0.024	0.2735	No
58	GLT25D1	GLT25D1	4708	0.022	0.2562	No
59	CHI3L1	CHI3L1	4752	0.021	0.2577	No
60	TGFBI	TGFBI	4792	0.021	0.2592	No
61	PSCDBP	PSCDBP	4800	0.021	0.2623	No
62	TNFRSF1B	TNFRSF1B	4866	0.021	0.2626	No
63	ALOX5	ALOX5	4872	0.021	0.2658	No
64	HEXB	HEXB	5023	0.020	0.2620	No
65	CNN2	CNN2	5091	0.020	0.2620	No
66	CASP4	CASP4	5106	0.020	0.2645	No
67	ACSL1	ACSL1	5130	0.020	0.2666	No
68	FLJ22662	FLJ22662	5151	0.020	0.2688	No
69	ANXA1	ANXA1	5293	0.019	0.2653	No
70	FCGR2A	FCGR2A	5414	0.018	0.2626	No
71	HFE	HFE	5423	0.018	0.2652	No
72	TMBIM1	TMBIM1	5437	0.018	0.2675	No
73	TNFAIP8	TNFAIP8	5465	0.018	0.2692	No
74	BATF	BATF	5532	0.018	0.2689	No
75	PYGL	PYGL	5661	0.017	0.2657	No
76	PTPRC	PTPRC	5766	0.017	0.2636	No
77	TRPM2	TRPM2	5773	0.017	0.2660	No
78	CTSC	CTSC	6083	0.016	0.2540	No
79	MGAT1	MGAT1	6097	0.015	0.2559	No
80	CD14	CD14	6129	0.015	0.2569	No
81	ARPC1B	ARPC1B	6192	0.015	0.2565	No
82	RAB27A	RAB27A	6204	0.015	0.2584	No
83	CD4	CD4	6236	0.015	0.2593	No
84	CDCP1	CDCP1	6238	0.015	0.2616	No
85	EHD2	EHD2	6388	0.014	0.2570	No
86	PSCD4	PSCD4	6567	0.014	0.2508	No
87	FLJ20273	FLJ20273	6600	0.013	0.2515	No
88	P4HA2	P4HA2	7058	0.012	0.2320	No
89	TES	TES	7144	0.011	0.2299	No
90	ALDH3B1	ALDH3B1	7262	0.011	0.2262	No
91	BDKRB2	BDKRB2	7310	0.011	0.2257	No
92	LHFPL2	LHFPL2	7435	0.010	0.2216	No
93	CYBRD1	CYBRD1	7442	0.010	0.2230	No
94	RBMS1	RBMS1	7443	0.010	0.2247	No
95	PLAUR	PLAUR	7477	0.010	0.2248	No
96	HEXA	HEXA	7556	0.010	0.2228	No
97	DSC2	DSC2	7848	0.009	0.2106	No
98	MYO1F	MYO1F	7975	0.009	0.2061	No
99	SHC1	SHC1	8045	0.008	0.2042	No
100	LILRB3	LILRB3	8107	0.008	0.2027	No
101	FES	FES	8143	0.008	0.2024	No
102	MAN1A1	MAN1A1	8727	0.006	0.1761	No
103	SLAMF8	SLAMF8	8876	0.006	0.1701	No
104	AIM1	AIM1	9026	0.005	0.1640	No
105	SFT2D2	SFT2D2	9107	0.005	0.1610	No
106	SYNGR2	SYNGR2	9437	0.004	0.1462	No
107	RHOG	RHOG	9578	0.003	0.1402	No
108	LAPTM5	LAPTM5	9604	0.003	0.1396	No
109	TLR2	TLR2	9702	0.003	0.1355	No
110	TRIM38	TRIM38	9876	0.002	0.1278	No
111	SLC11A1	SLC11A1	9885	0.002	0.1278	No
112	TGOLN2	TGOLN2	9931	0.002	0.1261	No
113	HK3	HK3	9971	0.002	0.1246	No
114	UAP1	UAP1	10169	0.001	0.1156	No
115	GNA15	GNA15	10507	0.000	0.0999	No
116	CSTA	CSTA	10682	-0.000	0.0918	No
117	S100A11	S100A11	10703	-0.000	0.0909	No
118	LAIR1	LAIR1	10798	-0.000	0.0866	No
119	LGALS1	LGALS1	11128	-0.001	0.0714	No
120	PTPN6	PTPN6	11227	-0.002	0.0671	No
121	NOD2	NOD2	11272	-0.002	0.0654	No
122	SWAP70	SWAP70	11405	-0.002	0.0596	No
123	LILRB2	LILRB2	11421	-0.002	0.0593	No
124	FCGR2B	FCGR2B	11499	-0.003	0.0561	No
125	CLIC1	CLIC1	11509	-0.003	0.0561	No
126	MRC2	MRC2	11609	-0.003	0.0520	No
127	LCP1	LCP1	11622	-0.003	0.0519	No
128	ENG	ENG	11938	-0.004	0.0379	No
129	LTBP2	LTBP2	11962	-0.004	0.0375	No
130	PDPN	PDPN	11998	-0.004	0.0365	No
131	C5AR1	C5AR1	12203	-0.005	0.0278	No
132	STXBP2	STXBP2	12501	-0.006	0.0149	No
133	CTSB	CTSB	12661	-0.007	0.0085	No
134	LY75	LY75	12816	-0.007	0.0025	No
135	CASP8	CASP8	12893	-0.007	0.0001	No
136	LTBP1	LTBP1	13035	-0.008	-0.0053	No
137	RUNX2	RUNX2	13175	-0.008	-0.0105	No
138	CASP1	CASP1	13302	-0.009	-0.0149	No
139	ITGA4	ITGA4	13362	-0.009	-0.0163	No
140	AMPD3	AMPD3	13388	-0.009	-0.0160	No
141	S100A13	S100A13	13428	-0.009	-0.0164	No
142	TEC	TEC	13487	-0.009	-0.0176	No
143	STAT6	STAT6	13627	-0.010	-0.0226	No
144	SCPEP1	SCPEP1	13899	-0.011	-0.0335	No
145	ITGB2	ITGB2	13986	-0.011	-0.0358	No
146	PROCR	PROCR	14056	-0.011	-0.0372	No
147	COL5A1	COL5A1	14074	-0.011	-0.0362	No
148	COL8A2	COL8A2	14151	-0.012	-0.0379	No
149	CCDC109B	CCDC109B	14261	-0.012	-0.0410	No
150	LY96	LY96	14269	-0.012	-0.0394	No
151	ANXA4	ANXA4	14631	-0.013	-0.0542	No
152	TRADD	TRADD	14833	-0.014	-0.0613	No
153	FXYD5	FXYD5	14924	-0.014	-0.0632	No
154	FURIN	FURIN	15012	-0.015	-0.0649	No
155	DAB2	DAB2	15121	-0.015	-0.0675	No
156	PGCP	PGCP	15177	-0.016	-0.0675	No
157	MAPK13	MAPK13	15279	-0.016	-0.0697	No
158	UCP2	UCP2	15449	-0.017	-0.0749	No
159	MSR1	MSR1	15535	-0.017	-0.0762	No
160	CASP5	CASP5	15558	-0.017	-0.0744	No
161	POLD4	POLD4	15599	-0.017	-0.0735	No
162	ASL	ASL	15697	-0.018	-0.0752	No
163	STAB1	STAB1	15860	-0.018	-0.0799	No
164	ST14	ST14	15998	-0.019	-0.0832	No
165	TIMP1	TIMP1	16033	-0.019	-0.0817	No
166	SIGLEC7	SIGLEC7	16107	-0.019	-0.0820	No
167	DSE	DSE	16192	-0.020	-0.0827	No
168	SERPINA1	SERPINA1	16362	-0.021	-0.0873	No
169	EMP3	EMP3	16399	-0.021	-0.0857	No
170	MGST2	MGST2	16668	-0.022	-0.0946	No
171	MFSD1	MFSD1	16964	-0.023	-0.1047	No
172	WIPF1	WIPF1	17056	-0.024	-0.1051	No
173	SIGLEC9	SIGLEC9	17366	-0.025	-0.1154	No
174	CCR5	CCR5	17404	-0.026	-0.1130	No
175	VDR	VDR	17575	-0.027	-0.1167	No
176	ITGAM	ITGAM	17946	-0.029	-0.1294	No
177	MS4A4A	MS4A4A	18007	-0.029	-0.1275	No
178	PTPN22	PTPN22	18066	-0.030	-0.1254	No
179	TNFAIP3	TNFAIP3	18220	-0.030	-0.1277	No
180	TRIM22	TRIM22	18283	-0.031	-0.1256	No
181	TNFRSF1A	TNFRSF1A	18376	-0.031	-0.1249	No
182	SAT1	SAT1	18435	-0.032	-0.1225	No
183	RELB	RELB	18625	-0.033	-0.1260	No
184	MAFB	MAFB	18670	-0.033	-0.1228	No
185	COPZ2	COPZ2	19095	-0.036	-0.1368	No
186	RABGAP1L	RABGAP1L	19333	-0.038	-0.1417	No
187	KYNU	KYNU	19528	-0.040	-0.1444	No
188	THBD	THBD	19532	-0.040	-0.1382	No
189	IL1R1	IL1R1	19546	-0.040	-0.1324	No
190	FMNL1	FMNL1	19627	-0.041	-0.1297	No
191	SLC10A3	SLC10A3	19679	-0.041	-0.1255	No
192	RAB11FIP1	RAB11FIP1	19728	-0.041	-0.1211	No
193	RAB32	RAB32	19768	-0.042	-0.1162	No
194	GRN	GRN	19813	-0.042	-0.1114	No
195	MAN2B1	MAN2B1	20031	-0.045	-0.1144	No
196	SP100	SP100	20037	-0.045	-0.1074	No
197	S100A4	S100A4	20089	-0.046	-0.1024	No
198	NPC2	NPC2	20205	-0.047	-0.1003	No
199	TNFRSF11A	TNFRSF11A	20262	-0.048	-0.0953	No
200	RRAS	RRAS	20323	-0.049	-0.0903	No
201	PHF11	PHF11	20428	-0.050	-0.0871	No
202	PIGP	PIGP	20442	-0.050	-0.0796	No
203	IFI30	IFI30	20457	-0.051	-0.0721	No
204	VAMP5	VAMP5	20551	-0.052	-0.0680	No
205	RAC2	RAC2	21019	-0.063	-0.0797	No
206	RBKS	RBKS	21065	-0.065	-0.0714	No
207	BLVRB	BLVRB	21104	-0.066	-0.0625	No
208	ICAM3	ICAM3	21189	-0.070	-0.0553	No
209	LGALS3	LGALS3	21310	-0.076	-0.0487	No
210	ECGF1	ECGF1	21391	-0.082	-0.0392	No
211	CEBPB	CEBPB	21428	-0.086	-0.0270	No
212	IGFBP6	IGFBP6	21454	-0.091	-0.0135	No
213	C1orf54	C1orf54	21561	-0.125	0.0016	No