Details for gene set VERHAAK_CL

Table: GSEA Results Summary

Dataset	shNF1_exprs.shNF1_phenotype.cls #shNF1_versus_shCtrl.shNF1_phenotype.cls #shNF1_versus_shCtrl_repos
Phenotype	shNF1_phenotype.cls#shNF1_versus_shCtrl_repos
Upregulated in class	shCtrl
GeneSet	VERHAAK_CL_2010
Enrichment Score (ES)	-0.24073233
Normalized Enrichment Score (NES)	-1.0741992
Nominal p-value	0.3026316
FDR q-value	0.41749892
FWER p-Value	0.999

Table: GSEA details [plain text format]
	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	DMWD	DMWD	101	0.089	0.0162	No
2	RIN1	RIN1	125	0.086	0.0354	No
3	ITGB8	ITGB8	222	0.076	0.0488	No
4	LRP10	LRP10	479	0.062	0.0516	No
5	EPHB4	EPHB4	491	0.062	0.0657	No
6	GJA1	GJA1	705	0.056	0.0690	No
7	PMP22	PMP22	706	0.056	0.0823	No
8	BTBD2	BTBD2	945	0.052	0.0834	No
9	ZNF45	ZNF45	1157	0.048	0.0849	No
10	GRIK1	GRIK1	1270	0.046	0.0906	No
11	NPAS3	NPAS3	1331	0.046	0.0985	No
12	LRP5	LRP5	1507	0.043	0.1006	No
13	DAG1	DAG1	1553	0.043	0.1087	No
14	LAMB2	LAMB2	1622	0.042	0.1154	No
15	ZNF8	ZNF8	1652	0.042	0.1240	No
16	POFUT1	POFUT1	1869	0.040	0.1233	No
17	NR2F6	NR2F6	1883	0.040	0.1321	No
18	FZD7	FZD7	2089	0.038	0.1314	No
19	ADAM19	ADAM19	2199	0.037	0.1350	No
20	FBXO17	FBXO17	2679	0.033	0.1205	No
21	HS3ST3B1	HS3ST3B1	2725	0.033	0.1262	No
22	OSBPL3	OSBPL3	2755	0.033	0.1325	No
23	SOX9	SOX9	2786	0.032	0.1388	No
24	IRS2	IRS2	2823	0.032	0.1447	No
25	SLC6A11	SLC6A11	2837	0.032	0.1517	No
26	SMO	SMO	2849	0.032	0.1587	No
27	ITGA7	ITGA7	2900	0.032	0.1639	No
28	ZFHX4	ZFHX4	3078	0.031	0.1628	No
29	FZD3	FZD3	3087	0.030	0.1697	No
30	JAG1	JAG1	3388	0.028	0.1624	No
31	TRIP6	TRIP6	3449	0.028	0.1662	No
32	EXTL3	EXTL3	3782	0.026	0.1569	No
33	CD151	CD151	4233	0.024	0.1416	No
34	MGC2752	MGC2752	4354	0.023	0.1415	No
35	M6PRBP1	M6PRBP1	4415	0.023	0.1441	No
36	CDH2	CDH2	4651	0.022	0.1383	No
37	CLIP2	CLIP2	4695	0.022	0.1414	No
38	DENND2A	DENND2A	4698	0.022	0.1464	No
39	LRFN3	LRFN3	4760	0.021	0.1486	No
40	GLI2	GLI2	4826	0.021	0.1506	No
41	CDK6	CDK6	4843	0.021	0.1548	No
42	GRIK5	GRIK5	5242	0.019	0.1407	No
43	TGFB3	TGFB3	5291	0.019	0.1430	No
44	EGFR	EGFR	5421	0.018	0.1413	No
45	GLG1	GLG1	5741	0.017	0.1304	No
46	TLE2	TLE2	5963	0.016	0.1239	No
47	MAB21L1	MAB21L1	6064	0.016	0.1229	No
48	SLC12A4	SLC12A4	6112	0.015	0.1244	No
49	MEGF8	MEGF8	6117	0.015	0.1278	No
50	ACSL3	ACSL3	6283	0.015	0.1236	No
51	ZNF134	ZNF134	6322	0.015	0.1252	No
52	KLHL25	KLHL25	6325	0.015	0.1286	No
53	CDH4	CDH4	6379	0.014	0.1295	No
54	KLHL4	KLHL4	6708	0.013	0.1173	No
55	RGS12	RGS12	6724	0.013	0.1197	No
56	BLM	BLM	6773	0.013	0.1204	No
57	TRIB2	TRIB2	6861	0.013	0.1193	No
58	KEAP1	KEAP1	7153	0.011	0.1085	No
59	SEMA6D	SEMA6D	7247	0.011	0.1068	No
60	CENTD1	CENTD1	7304	0.011	0.1067	No
61	ZNF606	ZNF606	7375	0.011	0.1060	No
62	SLC2A10	SLC2A10	7624	0.010	0.0968	No
63	ACSBG1	ACSBG1	7763	0.009	0.0925	No
64	ANXA5	ANXA5	7934	0.009	0.0867	No
65	SSH3	SSH3	7939	0.009	0.0886	No
66	CAMK2B	CAMK2B	8145	0.008	0.0809	No
67	AKT2	AKT2	8213	0.008	0.0796	No
68	CD3EAP	CD3EAP	8274	0.008	0.0786	No
69	DOCK6	DOCK6	8469	0.007	0.0712	No
70	IRF3	IRF3	8619	0.007	0.0658	No
71	PTPRA	PTPRA	8701	0.006	0.0635	No
72	NES	NES	8781	0.006	0.0613	No
73	SOCS2	SOCS2	9003	0.005	0.0522	No
74	PRKD2	PRKD2	9119	0.005	0.0480	No
75	SPRY2	SPRY2	9196	0.005	0.0455	No
76	B3GALT1	B3GALT1	9254	0.004	0.0439	No
77	PCSK5	PCSK5	9270	0.004	0.0442	No
78	MCC	MCC	9464	0.004	0.0361	No
79	TGIF2	TGIF2	9849	0.002	0.0188	No
80	ZNF211	ZNF211	10557	0.000	-0.0141	No
81	VPS16	VPS16	10828	-0.001	-0.0266	No
82	ELOVL2	ELOVL2	10941	-0.001	-0.0316	No
83	C19orf22	C19orf22	10951	-0.001	-0.0318	No
84	SLC6A9	SLC6A9	10965	-0.001	-0.0321	No
85	ZNF446	ZNF446	10995	-0.001	-0.0332	No
86	PIPOX	PIPOX	11036	-0.001	-0.0348	No
87	POMT2	POMT2	11041	-0.001	-0.0347	No
88	GALNT4	GALNT4	11100	-0.001	-0.0371	No
89	TMEM161A	TMEM161A	11482	-0.003	-0.0542	No
90	ZNF235	ZNF235	11842	-0.004	-0.0701	No
91	PDGFA	PDGFA	11928	-0.004	-0.0731	No
92	CC2D1A	CC2D1A	11960	-0.004	-0.0735	No
93	LFNG	LFNG	11963	-0.004	-0.0726	No
94	RFX2	RFX2	12049	-0.005	-0.0755	No
95	SEMA6A	SEMA6A	12257	-0.005	-0.0839	No
96	ZNF20	ZNF20	12334	-0.006	-0.0861	No
97	ZNF227	ZNF227	12527	-0.006	-0.0936	No
98	DLC1	DLC1	13283	-0.009	-0.1268	No
99	CALM1	CALM1	13384	-0.009	-0.1294	No
100	JUND	JUND	13403	-0.009	-0.1281	No
101	SNTA1	SNTA1	13429	-0.009	-0.1271	No
102	RFXANK	RFXANK	13908	-0.011	-0.1469	No
103	HSPBP1	HSPBP1	14068	-0.011	-0.1517	No
104	PLA2G5	PLA2G5	14303	-0.012	-0.1597	No
105	CD97	CD97	14451	-0.013	-0.1636	No
106	SHOX2	SHOX2	14494	-0.013	-0.1625	No
107	NR2E1	NR2E1	14632	-0.013	-0.1657	No
108	SIPA1L1	SIPA1L1	14800	-0.014	-0.1702	No
109	APBA3	APBA3	14852	-0.014	-0.1692	No
110	MEOX2	MEOX2	14875	-0.014	-0.1669	No
111	LHFP	LHFP	14968	-0.015	-0.1677	No
112	ZNF264	ZNF264	15038	-0.015	-0.1674	No
113	PTPN14	PTPN14	15140	-0.015	-0.1685	No
114	ZNF304	ZNF304	15162	-0.015	-0.1658	No
115	EYA2	EYA2	15194	-0.016	-0.1635	No
116	SARS2	SARS2	15478	-0.017	-0.1728	No
117	ARNTL	ARNTL	16153	-0.020	-0.1996	No
118	NPEPL1	NPEPL1	16370	-0.021	-0.2047	No
119	GNAS	GNAS	16635	-0.022	-0.2119	No
120	PRPF31	PRPF31	16640	-0.022	-0.2068	No
121	NDP	NDP	16837	-0.023	-0.2106	No
122	KIAA0355	KIAA0355	16884	-0.023	-0.2072	No
123	TEAD3	TEAD3	17057	-0.024	-0.2096	No
124	RASGRP1	RASGRP1	17176	-0.024	-0.2094	No
125	FGFR3	FGFR3	17239	-0.025	-0.2064	No
126	LRRC16	LRRC16	17354	-0.025	-0.2057	No
127	MYO5C	MYO5C	17998	-0.029	-0.2288	No
128	HMG20B	HMG20B	18153	-0.030	-0.2289	No
129	SCAMP4	SCAMP4	18197	-0.030	-0.2237	No
130	RGS6	RGS6	18453	-0.032	-0.2281	No
131	RBCK1	RBCK1	18696	-0.033	-0.2315	No
132	ZNF419	ZNF419	18896	-0.035	-0.2325	Yes
133	ABCD2	ABCD2	18967	-0.035	-0.2274	Yes
134	ILK	ILK	19003	-0.036	-0.2207	Yes
135	GPR56	GPR56	19041	-0.036	-0.2140	Yes
136	PEPD	PEPD	19062	-0.036	-0.2064	Yes
137	NOS2A	NOS2A	19113	-0.036	-0.2001	Yes
138	GSTK1	GSTK1	19250	-0.037	-0.1976	Yes
139	CDH6	CDH6	19695	-0.041	-0.2086	Yes
140	KLHDC8A	KLHDC8A	19821	-0.042	-0.2044	Yes
141	TBX2	TBX2	19827	-0.042	-0.1946	Yes
142	RBM42	RBM42	19934	-0.044	-0.1892	Yes
143	TMEM147	TMEM147	20087	-0.046	-0.1855	Yes
144	ERCC2	ERCC2	20215	-0.047	-0.1804	Yes
145	TMED1	TMED1	20441	-0.050	-0.1789	Yes
146	CREB5	CREB5	20498	-0.051	-0.1694	Yes
147	QTRT1	QTRT1	20652	-0.054	-0.1637	Yes
148	GNG7	GNG7	20820	-0.058	-0.1578	Yes
149	KCNF1	KCNF1	20826	-0.058	-0.1444	Yes
150	ZNF671	ZNF671	20893	-0.060	-0.1334	Yes
151	MLC1	MLC1	20941	-0.061	-0.1212	Yes
152	MEIS1	MEIS1	21219	-0.071	-0.1174	Yes
153	SLC4A4	SLC4A4	21238	-0.072	-0.1012	Yes
154	LMO2	LMO2	21371	-0.081	-0.0883	Yes
155	VAV3	VAV3	21521	-0.104	-0.0708	Yes
156	GAS1	GAS1	21567	-0.130	-0.0421	Yes
157	WSCD1	WSCD1	21593	-0.184	0.0001	Yes