DatasetNF1_GRD_exprs.NF1_GRD_phenotype.cls
#GRD_versus_Ctrl.NF1_GRD_phenotype.cls
#GRD_versus_Ctrl_repos
PhenotypeNF1_GRD_phenotype.cls#GRD_versus_Ctrl_repos
Upregulated in classGRD
GeneSetWANG_PN_2017
Enrichment Score (ES)0.33894452
Normalized Enrichment Score (NES)1.2539452
Nominal p-value0.12745099
FDR q-value0.13697912
FWER p-Value0.76
Table: GSEA Results Summary



Fig 1: Enrichment plot: WANG_PN_2017   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLTITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1MTSS1MTSS13620.0850.0567Yes
2PLCB4PLCB411090.0580.0726Yes
3MYBMYB11660.0570.1196Yes
4HN1HN119660.0450.1214Yes
5SOX10SOX1022180.0420.1462Yes
6RAB33ARAB33A22650.0420.1801Yes
7DCTN3DCTN323420.0410.2118Yes
8NARFNARF23940.0400.2441Yes
9MAST1MAST125780.0390.2691Yes
10KLRK1KLRK129430.0360.2832Yes
11VIPR2VIPR229960.0350.3113Yes
12MYT1MYT130530.0350.3389Yes
13CDKN1CCDKN1C40670.0280.3160No
14PKMYT1PKMYT146150.0250.3119No
15DACH1DACH149220.0230.3174No
16JPH3JPH354110.0200.3125No
17GPR17GPR1773610.0120.2325No
18NPPANPPA77710.0110.2226No
19PCDHA9PCDHA979770.0100.2215No
20RASL11BRASL11B81530.0090.2211No
21KLRC4KLRC482650.0090.2234No
22KCNK3KCNK384060.0080.2239No
23SMPD3SMPD391000.0060.1966No
24PFDN2PFDN294010.0050.1866No
25TCP1TCP194420.0040.1886No
26BAMBIBAMBI94810.0040.1904No
27GRID2GRID295390.0040.1912No
28NHLH1NHLH1101130.0020.1663No
29EPHB1EPHB1102730.0010.1601No
30ZNF643ZNF643105180.0010.1492No
31HRASLSHRASLS106260.0000.1443No
32PDGFRAPDGFRA11054-0.0010.1257No
33HOXD3HOXD311340-0.0020.1145No
34ERBB3ERBB311564-0.0030.1068No
35IL1RAPL1IL1RAPL111783-0.0040.1001No
36KLRC3KLRC313100-0.0090.0464No
37CLGNCLGN13156-0.0090.0515No
38CA10CA1013883-0.0120.0278No
39SIM2SIM214181-0.0130.0251No
40GABRB3GABRB314334-0.0130.0295No
41BCL11ABCL11A14923-0.0160.0158No
42HDAC2HDAC215049-0.0160.0241No
43UGT8UGT815565-0.0180.0162No
44SLC17A6SLC17A616364-0.022-0.0018No
45PAK7PAK718244-0.033-0.0608No
46PTTG1PTTG118617-0.035-0.0475No
47CENPJCENPJ18780-0.037-0.0233No
48SLC1A1SLC1A119759-0.047-0.0284No
49ZNF804AZNF804A20595-0.060-0.0150No
50NMUNMU20948-0.0710.0300No
Table: GSEA details [plain text format]



Fig 2: WANG_PN_2017   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: WANG_PN_2017: Random ES distribution   
Gene set null distribution of ES for WANG_PN_2017