Details for gene set VDR

Table: GSEA Results Summary

Dataset	NF1_GRD_exprs.NF1_GRD_phenotype.cls #GRD_versus_Ctrl.NF1_GRD_phenotype.cls #GRD_versus_Ctrl_repos
Phenotype	NF1_GRD_phenotype.cls#GRD_versus_Ctrl_repos
Upregulated in class	Ctrl
GeneSet	VDR_REGULON
Enrichment Score (ES)	-0.298967
Normalized Enrichment Score (NES)	-1.2960764
Nominal p-value	0.044487428
FDR q-value	0.08163539
FWER p-Value	0.673

Table: GSEA details [plain text format]
	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PTPRD	PTPRD	9	0.241	0.0552	No
2	HMBOX1	HMBOX1	247	0.094	0.0660	No
3	MPZ	MPZ	707	0.069	0.0606	No
4	ABAT	ABAT	806	0.066	0.0711	No
5	ALDH3A1	ALDH3A1	904	0.063	0.0811	No
6	TCF12	TCF12	1195	0.057	0.0806	No
7	PVR	PVR	1393	0.053	0.0836	No
8	TRIM24	TRIM24	1626	0.049	0.0843	No
9	HLA-DQB1	HLA-DQB1	1749	0.048	0.0896	No
10	GPRC5A	GPRC5A	2052	0.044	0.0857	No
11	TBX3	TBX3	2301	0.041	0.0837	No
12	MID2	MID2	2308	0.041	0.0929	No
13	FLI1	FLI1	2518	0.039	0.0922	No
14	IPPK	IPPK	2575	0.039	0.0985	No
15	ABL2	ABL2	2705	0.038	0.1012	No
16	ICOSLG	ICOSLG	2985	0.035	0.0964	No
17	JUP	JUP	3350	0.033	0.0870	No
18	TUBB2A	TUBB2A	3428	0.032	0.0908	No
19	PTPRU	PTPRU	3570	0.031	0.0914	No
20	STEAP3	STEAP3	3794	0.029	0.0878	No
21	RAD50	RAD50	3942	0.028	0.0875	No
22	ADRB2	ADRB2	4272	0.027	0.0783	No
23	KRT7	KRT7	4491	0.025	0.0740	No
24	LRRC8E	LRRC8E	4496	0.025	0.0797	No
25	STEAP1	STEAP1	4767	0.024	0.0725	No
26	IL15RA	IL15RA	4976	0.023	0.0681	No
27	ASPH	ASPH	5215	0.021	0.0619	No
28	ZFR	ZFR	5272	0.021	0.0642	No
29	PNMA2	PNMA2	5558	0.020	0.0555	No
30	SOX11	SOX11	5768	0.019	0.0501	No
31	ITPR3	ITPR3	5808	0.019	0.0526	No
32	GALNT6	GALNT6	5829	0.019	0.0559	No
33	S100A8	S100A8	6003	0.018	0.0520	No
34	C9orf3	C9orf3	6008	0.018	0.0559	No
35	CHD7	CHD7	6015	0.018	0.0597	No
36	FAM114A1	FAM114A1	6037	0.018	0.0627	No
37	MARK1	MARK1	6078	0.017	0.0649	No
38	SRGN	SRGN	6201	0.017	0.0631	No
39	AKR1C1	AKR1C1	6548	0.015	0.0505	No
40	TNFSF9	TNFSF9	6792	0.014	0.0425	No
41	LLGL2	LLGL2	6868	0.014	0.0422	No
42	APOL1	APOL1	6927	0.014	0.0427	No
43	NAV3	NAV3	7054	0.013	0.0399	No
44	CDC42EP1	CDC42EP1	7376	0.012	0.0277	No
45	BCL2A1	BCL2A1	7441	0.012	0.0274	No
46	PHLPP1	PHLPP1	7598	0.011	0.0227	No
47	ME1	ME1	7659	0.011	0.0224	No
48	TGM2	TGM2	7752	0.011	0.0206	No
49	C16orf71	C16orf71	7816	0.010	0.0201	No
50	IL1R1	IL1R1	7833	0.010	0.0217	No
51	IL15	IL15	8040	0.009	0.0143	No
52	CHST15	CHST15	8243	0.009	0.0069	No
53	TRAF3IP1	TRAF3IP1	8394	0.008	0.0018	No
54	LAMC2	LAMC2	8418	0.008	0.0025	No
55	TCIRG1	TCIRG1	8678	0.007	-0.0079	No
56	ABLIM3	ABLIM3	8694	0.007	-0.0069	No
57	PI15	PI15	8869	0.006	-0.0136	No
58	S100A2	S100A2	9027	0.006	-0.0196	No
59	TNNC2	TNNC2	9235	0.005	-0.0280	No
60	ACSL5	ACSL5	9257	0.005	-0.0278	No
61	CDCP1	CDCP1	9398	0.005	-0.0333	No
62	TNNT1	TNNT1	9566	0.004	-0.0402	No
63	SP140L	SP140L	9620	0.004	-0.0418	No
64	IL24	IL24	9822	0.003	-0.0506	No
65	HPCAL1	HPCAL1	10003	0.002	-0.0584	No
66	TRIM38	TRIM38	10082	0.002	-0.0616	No
67	CBR1	CBR1	10085	0.002	-0.0612	No
68	MCOLN3	MCOLN3	10364	0.001	-0.0739	No
69	SPAG1	SPAG1	10412	0.001	-0.0759	No
70	DCAF7	DCAF7	10450	0.001	-0.0775	No
71	CDS1	CDS1	10585	0.000	-0.0836	No
72	LAMB3	LAMB3	10602	0.000	-0.0843	No
73	AOX1	AOX1	10665	-0.000	-0.0872	No
74	G0S2	G0S2	11140	-0.002	-0.1089	No
75	HTR7	HTR7	11232	-0.002	-0.1127	No
76	KYNU	KYNU	11298	-0.002	-0.1153	No
77	MAGEB2	MAGEB2	11801	-0.004	-0.1377	No
78	GMDS	GMDS	11876	-0.004	-0.1402	No
79	HMGA1	HMGA1	11895	-0.004	-0.1401	No
80	PHF7	PHF7	12048	-0.005	-0.1461	No
81	TMEM40	TMEM40	12102	-0.005	-0.1474	No
82	AGPAT2	AGPAT2	12113	-0.005	-0.1467	No
83	PIK3CD	PIK3CD	12129	-0.005	-0.1462	No
84	C1orf61	C1orf61	12173	-0.005	-0.1470	No
85	TNFAIP2	TNFAIP2	12244	-0.006	-0.1490	No
86	CXCL3	CXCL3	12327	-0.006	-0.1514	No
87	PLEK2	PLEK2	12406	-0.006	-0.1537	No
88	GCNT1	GCNT1	12523	-0.007	-0.1576	No
89	RAB27A	RAB27A	12626	-0.007	-0.1607	No
90	EVI2A	EVI2A	12796	-0.007	-0.1669	No
91	GPR39	GPR39	12880	-0.008	-0.1690	No
92	SERPINA1	SERPINA1	12892	-0.008	-0.1677	No
93	DOCK2	DOCK2	13017	-0.008	-0.1715	No
94	ABCA7	ABCA7	13097	-0.009	-0.1732	No
95	BANK1	BANK1	13225	-0.009	-0.1770	No
96	DENND3	DENND3	13479	-0.010	-0.1865	No
97	PKP3	PKP3	13678	-0.011	-0.1933	No
98	COL17A1	COL17A1	13955	-0.012	-0.2034	No
99	STARD5	STARD5	14125	-0.013	-0.2084	No
100	MME	MME	14310	-0.013	-0.2139	No
101	SPINT1	SPINT1	14601	-0.014	-0.2241	No
102	CD55	CD55	15072	-0.016	-0.2423	No
103	SPAG4	SPAG4	15315	-0.017	-0.2495	No
104	ID4	ID4	15399	-0.018	-0.2493	No
105	SERPINB7	SERPINB7	15479	-0.018	-0.2488	No
106	CCND3	CCND3	15504	-0.018	-0.2458	No
107	TRAPPC10	TRAPPC10	16153	-0.021	-0.2711	No
108	SALL2	SALL2	16354	-0.022	-0.2753	No
109	UBE2Z	UBE2Z	16451	-0.023	-0.2746	No
110	FMNL1	FMNL1	16757	-0.024	-0.2833	No
111	YWHAE	YWHAE	17050	-0.026	-0.2910	No
112	PDCD1LG2	PDCD1LG2	17082	-0.026	-0.2865	No
113	CASP4	CASP4	17111	-0.026	-0.2818	No
114	STAT6	STAT6	17480	-0.028	-0.2925	Yes
115	MSX2	MSX2	17495	-0.028	-0.2867	Yes
116	SVIL	SVIL	17535	-0.028	-0.2820	Yes
117	EXPH5	EXPH5	17572	-0.028	-0.2771	Yes
118	IL2RB	IL2RB	17658	-0.029	-0.2744	Yes
119	SYNGR2	SYNGR2	17709	-0.029	-0.2700	Yes
120	NCAN	NCAN	17822	-0.030	-0.2683	Yes
121	RIPK4	RIPK4	17844	-0.030	-0.2624	Yes
122	TFAP2C	TFAP2C	17889	-0.030	-0.2574	Yes
123	PRKCD	PRKCD	18125	-0.032	-0.2611	Yes
124	SELPLG	SELPLG	18133	-0.032	-0.2540	Yes
125	MAP3K1	MAP3K1	18630	-0.035	-0.2690	Yes
126	MYO1D	MYO1D	18698	-0.036	-0.2638	Yes
127	PRICKLE3	PRICKLE3	18763	-0.037	-0.2583	Yes
128	SDC1	SDC1	18831	-0.037	-0.2528	Yes
129	ADARB1	ADARB1	18888	-0.038	-0.2468	Yes
130	TNFRSF10D	TNFRSF10D	18900	-0.038	-0.2385	Yes
131	DNASE1L1	DNASE1L1	18949	-0.038	-0.2319	Yes
132	LTBR	LTBR	18956	-0.038	-0.2234	Yes
133	ENOX2	ENOX2	19508	-0.044	-0.2390	Yes
134	SLC10A3	SLC10A3	19691	-0.046	-0.2369	Yes
135	JPH2	JPH2	19706	-0.046	-0.2270	Yes
136	PLEKHO1	PLEKHO1	19793	-0.047	-0.2201	Yes
137	TRAF1	TRAF1	19832	-0.048	-0.2109	Yes
138	C3	C3	20052	-0.051	-0.2094	Yes
139	CXCL1	CXCL1	20079	-0.051	-0.1988	Yes
140	VNN1	VNN1	20294	-0.054	-0.1962	Yes
141	SMARCD2	SMARCD2	20295	-0.054	-0.1836	Yes
142	PTPRH	PTPRH	20410	-0.056	-0.1759	Yes
143	STX11	STX11	20425	-0.057	-0.1634	Yes
144	IQSEC2	IQSEC2	20471	-0.058	-0.1522	Yes
145	NFKBIE	NFKBIE	20540	-0.059	-0.1418	Yes
146	SLC9A7	SLC9A7	20719	-0.064	-0.1353	Yes
147	SH3TC1	SH3TC1	20896	-0.069	-0.1275	Yes
148	IGFBP6	IGFBP6	21022	-0.074	-0.1163	Yes
149	CPPED1	CPPED1	21119	-0.078	-0.1028	Yes
150	CYB5R2	CYB5R2	21152	-0.080	-0.0858	Yes
151	PLP2	PLP2	21203	-0.083	-0.0688	Yes
152	LTBP2	LTBP2	21266	-0.088	-0.0514	Yes
153	TPMT	TPMT	21478	-0.121	-0.0332	Yes
154	FOSL1	FOSL1	21546	-0.167	0.0023	Yes