Details for gene set VERHAAK_PN

Table: GSEA Results Summary

Dataset	NF1_GRD_exprs.NF1_GRD_phenotype.cls #GRD_versus_Ctrl.NF1_GRD_phenotype.cls #GRD_versus_Ctrl_repos
Phenotype	NF1_GRD_phenotype.cls#GRD_versus_Ctrl_repos
Upregulated in class	GRD
GeneSet	VERHAAK_PN_2017
Enrichment Score (ES)	0.33894452
Normalized Enrichment Score (NES)	1.2055465
Nominal p-value	0.17330678
FDR q-value	0.12922944
FWER p-Value	0.558

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	MTSS1	MTSS1	362	0.085	0.0567	Yes
2	PLCB4	PLCB4	1109	0.058	0.0726	Yes
3	MYB	MYB	1166	0.057	0.1196	Yes
4	HN1	HN1	1966	0.045	0.1214	Yes
5	SOX10	SOX10	2218	0.042	0.1462	Yes
6	RAB33A	RAB33A	2265	0.042	0.1801	Yes
7	DCTN3	DCTN3	2342	0.041	0.2118	Yes
8	NARF	NARF	2394	0.040	0.2441	Yes
9	MAST1	MAST1	2578	0.039	0.2691	Yes
10	KLRK1	KLRK1	2943	0.036	0.2832	Yes
11	VIPR2	VIPR2	2996	0.035	0.3113	Yes
12	MYT1	MYT1	3053	0.035	0.3389	Yes
13	CDKN1C	CDKN1C	4067	0.028	0.3160	No
14	PKMYT1	PKMYT1	4615	0.025	0.3119	No
15	DACH1	DACH1	4922	0.023	0.3174	No
16	JPH3	JPH3	5411	0.020	0.3125	No
17	GPR17	GPR17	7361	0.012	0.2325	No
18	NPPA	NPPA	7771	0.011	0.2226	No
19	PCDHA9	PCDHA9	7977	0.010	0.2215	No
20	RASL11B	RASL11B	8153	0.009	0.2211	No
21	KLRC4	KLRC4	8265	0.009	0.2234	No
22	KCNK3	KCNK3	8406	0.008	0.2239	No
23	SMPD3	SMPD3	9100	0.006	0.1966	No
24	PFDN2	PFDN2	9401	0.005	0.1866	No
25	TCP1	TCP1	9442	0.004	0.1886	No
26	BAMBI	BAMBI	9481	0.004	0.1904	No
27	GRID2	GRID2	9539	0.004	0.1912	No
28	NHLH1	NHLH1	10113	0.002	0.1663	No
29	EPHB1	EPHB1	10273	0.001	0.1601	No
30	ZNF643	ZNF643	10518	0.001	0.1492	No
31	HRASLS	HRASLS	10626	0.000	0.1443	No
32	PDGFRA	PDGFRA	11054	-0.001	0.1257	No
33	HOXD3	HOXD3	11340	-0.002	0.1145	No
34	ERBB3	ERBB3	11564	-0.003	0.1068	No
35	IL1RAPL1	IL1RAPL1	11783	-0.004	0.1001	No
36	KLRC3	KLRC3	13100	-0.009	0.0464	No
37	CLGN	CLGN	13156	-0.009	0.0515	No
38	CA10	CA10	13883	-0.012	0.0278	No
39	SIM2	SIM2	14181	-0.013	0.0251	No
40	GABRB3	GABRB3	14334	-0.013	0.0295	No
41	BCL11A	BCL11A	14923	-0.016	0.0158	No
42	HDAC2	HDAC2	15049	-0.016	0.0241	No
43	UGT8	UGT8	15565	-0.018	0.0162	No
44	SLC17A6	SLC17A6	16364	-0.022	-0.0018	No
45	PAK7	PAK7	18244	-0.033	-0.0608	No
46	PTTG1	PTTG1	18617	-0.035	-0.0475	No
47	CENPJ	CENPJ	18780	-0.037	-0.0233	No
48	SLC1A1	SLC1A1	19759	-0.047	-0.0284	No
49	ZNF804A	ZNF804A	20595	-0.060	-0.0150	No
50	NMU	NMU	20948	-0.071	0.0300	No