Details for gene set VERHAAK_NEU

Table: GSEA Results Summary

Dataset	NF1_GRD_exprs.NF1_GRD_phenotype.cls #GRD_versus_Ctrl.NF1_GRD_phenotype.cls #GRD_versus_Ctrl_repos
Phenotype	NF1_GRD_phenotype.cls#GRD_versus_Ctrl_repos
Upregulated in class	Ctrl
GeneSet	VERHAAK_NEU_2010
Enrichment Score (ES)	-0.18673901
Normalized Enrichment Score (NES)	-0.79358894
Nominal p-value	0.9235182
FDR q-value	0.9089809
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CHN1	CHN1	119	0.116	0.0286	No
2	TSNAX	TSNAX	341	0.087	0.0437	No
3	FHIT	FHIT	457	0.080	0.0619	No
4	TCEAL1	TCEAL1	463	0.080	0.0850	No
5	SCHIP1	SCHIP1	901	0.063	0.0831	No
6	MORF4L2	MORF4L2	1212	0.056	0.0851	No
7	CRBN	CRBN	1221	0.056	0.1012	No
8	KCNJ3	KCNJ3	1832	0.047	0.0865	No
9	PPP1R1A	PPP1R1A	2009	0.045	0.0914	No
10	FBXO3	FBXO3	2057	0.044	0.1022	No
11	BASP1	BASP1	2365	0.040	0.0998	No
12	TPM3	TPM3	2494	0.039	0.1054	No
13	PPFIA2	PPFIA2	2958	0.036	0.0943	No
14	PARP8	PARP8	3029	0.035	0.1014	No
15	ADD3	ADD3	3392	0.032	0.0940	No
16	NSL1	NSL1	3459	0.032	0.1003	No
17	PGBD5	PGBD5	3513	0.031	0.1070	No
18	PEX11B	PEX11B	3829	0.029	0.1009	No
19	ATP5F1	ATP5F1	4199	0.027	0.0917	No
20	TTPA	TTPA	4337	0.026	0.0930	No
21	CRYM	CRYM	4369	0.026	0.0992	No
22	VSX1	VSX1	4464	0.025	0.1023	No
23	TMEM144	TMEM144	4656	0.024	0.1006	No
24	SNCG	SNCG	4769	0.024	0.1023	No
25	MGST3	MGST3	4881	0.023	0.1039	No
26	GABARAPL2	GABARAPL2	5064	0.022	0.1019	No
27	RND1	RND1	5219	0.021	0.1011	No
28	CRYZL1	CRYZL1	5244	0.021	0.1062	No
29	EPB41L3	EPB41L3	5297	0.021	0.1100	No
30	TTC1	TTC1	5985	0.018	0.0832	No
31	SIRT5	SIRT5	6064	0.017	0.0847	No
32	CDR1	CDR1	6065	0.017	0.0898	No
33	AGXT2L1	AGXT2L1	6196	0.017	0.0887	No
34	PRPSAP2	PRPSAP2	6207	0.017	0.0932	No
35	FUT9	FUT9	6298	0.016	0.0938	No
36	AGTPBP1	AGTPBP1	6379	0.016	0.0948	No
37	ANXA7	ANXA7	6413	0.016	0.0980	No
38	GNAI1	GNAI1	6552	0.015	0.0961	No
39	MGC72080	MGC72080	6759	0.014	0.0907	No
40	CAMK2G	CAMK2G	6862	0.014	0.0901	No
41	PPA1	PPA1	6887	0.014	0.0931	No
42	CA4	CA4	6891	0.014	0.0970	No
43	EDIL3	EDIL3	6960	0.014	0.0978	No
44	KCNK1	KCNK1	7034	0.013	0.0983	No
45	MAT2B	MAT2B	7115	0.013	0.0984	No
46	SNX11	SNX11	7303	0.012	0.0933	No
47	IMPA1	IMPA1	7327	0.012	0.0958	No
48	CCDC121	CCDC121	7369	0.012	0.0974	No
49	SAR1A	SAR1A	7430	0.012	0.0981	No
50	USP33	USP33	7677	0.011	0.0898	No
51	CDC42	CDC42	7706	0.011	0.0917	No
52	ORC4L	ORC4L	7993	0.010	0.0812	No
53	NDUFS3	NDUFS3	8003	0.010	0.0836	No
54	FXYD1	FXYD1	8146	0.009	0.0797	No
55	CALM2	CALM2	8218	0.009	0.0789	No
56	ENPP4	ENPP4	8634	0.007	0.0618	No
57	GUK1	GUK1	8646	0.007	0.0634	No
58	HPCAL4	HPCAL4	8764	0.007	0.0599	No
59	HPCA	HPCA	9476	0.004	0.0281	No
60	REPS2	REPS2	9607	0.004	0.0231	No
61	PPP2R5A	PPP2R5A	9841	0.003	0.0131	No
62	SEPW1	SEPW1	10378	0.001	-0.0116	No
63	NANOS1	NANOS1	10631	0.000	-0.0233	No
64	MAGEH1	MAGEH1	10633	0.000	-0.0233	No
65	BCAS1	BCAS1	10662	0.000	-0.0247	No
66	CUTC	CUTC	10699	-0.000	-0.0263	No
67	MMD	MMD	11165	-0.002	-0.0474	No
68	SEPP1	SEPP1	11451	-0.003	-0.0599	No
69	MDH1	MDH1	11609	-0.003	-0.0662	No
70	SLCO1A2	SLCO1A2	11966	-0.005	-0.0815	No
71	CASQ1	CASQ1	12231	-0.005	-0.0922	No
72	PEX19	PEX19	12748	-0.007	-0.1141	No
73	EVI2A	EVI2A	12796	-0.007	-0.1141	No
74	SLC30A10	SLC30A10	13514	-0.010	-0.1445	No
75	MBP	MBP	13559	-0.010	-0.1435	No
76	MYBPC1	MYBPC1	13750	-0.011	-0.1491	No
77	GPR22	GPR22	13807	-0.011	-0.1484	No
78	FAM49B	FAM49B	13875	-0.012	-0.1482	No
79	ATP5L	ATP5L	14017	-0.012	-0.1512	No
80	GABRB2	GABRB2	14212	-0.013	-0.1564	No
81	AKR7A3	AKR7A3	14423	-0.014	-0.1622	No
82	COX5B	COX5B	14494	-0.014	-0.1614	No
83	ATRNL1	ATRNL1	15040	-0.016	-0.1820	Yes
84	GRM1	GRM1	15067	-0.016	-0.1784	Yes
85	GRM3	GRM3	15106	-0.017	-0.1753	Yes
86	NDRG2	NDRG2	15120	-0.017	-0.1710	Yes
87	ENPP2	ENPP2	15253	-0.017	-0.1721	Yes
88	SGK3	SGK3	15307	-0.017	-0.1695	Yes
89	CPNE6	CPNE6	15408	-0.018	-0.1690	Yes
90	TCEAL2	TCEAL2	15517	-0.018	-0.1686	Yes
91	UGT8	UGT8	15565	-0.018	-0.1654	Yes
92	PSCD1	PSCD1	15634	-0.019	-0.1631	Yes
93	DHRS9	DHRS9	15701	-0.019	-0.1605	Yes
94	ANXA3	ANXA3	15751	-0.019	-0.1571	Yes
95	SH3GL3	SH3GL3	15758	-0.019	-0.1517	Yes
96	VIP	VIP	15786	-0.019	-0.1473	Yes
97	DYNC1I1	DYNC1I1	16423	-0.022	-0.1703	Yes
98	PLCL1	PLCL1	16734	-0.024	-0.1777	Yes
99	ACSL4	ACSL4	16737	-0.024	-0.1708	Yes
100	LYRM1	LYRM1	16811	-0.024	-0.1670	Yes
101	THTPA	THTPA	17061	-0.026	-0.1711	Yes
102	BEST1	BEST1	17159	-0.026	-0.1679	Yes
103	NTSR2	NTSR2	17219	-0.027	-0.1629	Yes
104	CLCA4	CLCA4	17277	-0.027	-0.1577	Yes
105	EDG1	EDG1	17474	-0.028	-0.1586	Yes
106	ARRB1	ARRB1	17728	-0.029	-0.1618	Yes
107	PDE6D	PDE6D	17843	-0.030	-0.1583	Yes
108	UROS	UROS	17887	-0.030	-0.1514	Yes
109	KIAA1598	KIAA1598	17974	-0.031	-0.1464	Yes
110	ANKRD46	ANKRD46	18519	-0.035	-0.1615	Yes
111	ROGDI	ROGDI	18649	-0.036	-0.1571	Yes
112	SH3GL2	SH3GL2	18995	-0.039	-0.1618	Yes
113	CCK	CCK	19492	-0.043	-0.1721	Yes
114	YPEL5	YPEL5	19594	-0.045	-0.1637	Yes
115	MSRB2	MSRB2	19719	-0.046	-0.1560	Yes
116	POPDC3	POPDC3	19791	-0.047	-0.1455	Yes
117	SLC16A7	SLC16A7	19910	-0.049	-0.1366	Yes
118	ACYP2	ACYP2	20030	-0.050	-0.1274	Yes
119	SERPINI1	SERPINI1	20241	-0.053	-0.1215	Yes
120	ANKS1B	ANKS1B	20262	-0.054	-0.1065	Yes
121	HPRT1	HPRT1	20301	-0.055	-0.0922	Yes
122	CRYL1	CRYL1	20724	-0.064	-0.0931	Yes
123	ZNF323	ZNF323	20788	-0.066	-0.0766	Yes
124	FEZF2	FEZF2	21069	-0.076	-0.0675	Yes
125	SPAST	SPAST	21117	-0.078	-0.0468	Yes
126	MRPL49	MRPL49	21214	-0.084	-0.0265	Yes
127	SLC31A2	SLC31A2	21529	-0.150	0.0031	Yes